If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ), 'gf_id' => 'HOM05D000867', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000867' ), 'data_identifier' => 'HOM05D000867', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000867', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '692', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09040' => 'bna', 'A02p22070' => 'bna', 'A03p13390' => 'bna', 'A06p48060' => 'bna', 'A07p11670' => 'bna', 'A07p14600' => 'bna', 'A07p43450' => 'bna', 'A08p08030' => 'bna', 'A09p20190' => 'bna', 'A09p32260' => 'bna', 'A09p38400' => 'bna', 'A09p42530' => 'bna', 'A10p13870' => 'bna', 'A10p17810' => 'bna', 'Aa31LG3G12380' => 'aar', 'Aa31LG4G8200' => 'aar', 'Aa31LG6G8900' => 'aar', 'Aa31LG7G6180' => 'aar', 'Aa31LG9G14590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4536' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4537' => 'aag', 'Actinidia00264' => 'ach', 'Actinidia00907' => 'ach', 'Actinidia02302' => 'ach', 'Actinidia08263' => 'ach', 'Actinidia10177' => 'ach', 'Actinidia11895' => 'ach', 'Actinidia11896' => 'ach', 'Actinidia16237' => 'ach', 'Actinidia22673' => 'ach', 'Actinidia23992' => 'ach', 'Actinidia27977' => 'ach', 'Actinidia28163' => 'ach', 'Actinidia29586' => 'ach', 'Actinidia33142' => 'ach', 'Actinidia38091' => 'ach', 'Actinidia39046' => 'ach', 'Actinidia39278' => 'ach', 'Ah.05g170070' => 'amhyb', 'Ah.14g087510' => 'amhyb', 'AL1G35692' => 'aly', 'AL1G50640' => 'aly', 'AL1G50680' => 'aly', 'AL2G24460' => 'aly', 'AL2G38470' => 'aly', 'AL6G42380' => 'aly', 'AL6G42650' => 'aly', 'AL8G17560' => 'aly', 'AL8G32270' => 'aly', 'Aqoxy1G00491' => 'aox', 'Aqoxy1G04004' => 'aox', 'Aqoxy6G00806' => 'aox', 'Aqoxy6G02804' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14ARY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18UVCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.21V7FE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5306M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.774JYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1VJLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BX6JSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F07HS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVX85Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2PSBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MRV38C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2M1WG' => 'arhy', 'AT1G22240' => 'ath', 'AT1G35730' => 'ath', 'AT1G35750' => 'ath', 'AT1G78160' => 'ath', 'AT4G08560' => 'ath', 'AT4G08840' => 'ath', 'AT5G43090' => 'ath', 'AT5G43110' => 'ath', 'AT5G56510' => 'ath', 'ATR0697G298' => 'atr', 'ATR0753G057' => 'atr', 'ATR1149G057' => 'atr', 'Atru.chr1.2353' => 'acertr', 'Atru.chr13.1204' => 'acertr', 'Atru.chr13.792' => 'acertr', 'Atru.chr3.2101' => 'acertr', 'Atru.chr3.2394' => 'acertr', 'Atru.chr4.1454' => 'acertr', 'AUR62010335' => 'cqu', 'AUR62016885' => 'cqu', 'AUR62018902' => 'cqu', 'AUR62027747' => 'cqu', 'AUR62044441' => 'cqu', 'BcaB01g04404' => 'bca', 'BcaB03g13976' => 'bca', 'BcaB03g15983' => 'bca', 'BcaB05g22279' => 'bca', 'BcaB05g25123' => 'bca', 'BcaB07g31024' => 'bca', 'BcaB07g32246' => 'bca', 'BcaB07g33150' => 'bca', 'BcaB08g36358' => 'bca', 'BcaB08g36726' => 'bca', 'BcaC01g06429' => 'bca', 'BcaC02g10823' => 'bca', 'BcaC03g14218' => 'bca', 'BcaC03g15799' => 'bca', 'BcaC04g19722' => 'bca', 'BcaC04g20082' => 'bca', 'BcaC04g21944' => 'bca', 'BcaC05g26152' => 'bca', 'BcaC05g26596' => 'bca', 'BcaC05g26771' => 'bca', 'BcaC06g31726' => 'bca', 'BcaC06g34945' => 'bca', 'BcaC06g35307' => 'bca', 'BcaC07g37510' => 'bca', 'BcaC08g43801' => 'bca', 'BcaC08g47390' => 'bca', 'BolC2t07635H' => 'bol', 'BolC2t09558H' => 'bol', 'BolC3t13999H' => 'bol', 'BolC4t23982H' => 'bol', 'BolC5t30834H' => 'bol', 'BolC5t31360H' => 'bol', 'BolC6t36311H' => 'bol', 'BolC6t40234H' => 'bol', 'BolC7t42268H' => 'bol', 'BolC7t42675H' => 'bol', 'BolC8t47830H' => 'bol', 'BolC8t47831H' => 'bol', 'BolC9t55458H' => 'bol', 'BolC9t57658H' => 'bol', 'BolC9t58207H' => 'bol', 'BraA02t05973Z' => 'bra', 'BraA02t06645Z' => 'bra', 'BraA02t06646Z' => 'bra', 'BraA02t06647Z' => 'bra', 'BraA02t06648Z' => 'bra', 'BraA02t07209Z' => 'bra', 'BraA03t10645Z' => 'bra', 'BraA06t27676Z' => 'bra', 'BraA07t28952Z' => 'bra', 'BraA07t29206Z' => 'bra', 'BraA07t31859Z' => 'bra', 'BraA08t32825Z' => 'bra', 'BraA08t32826Z' => 'bra', 'BraA09t37630Z' => 'bra', 'BraA09t38770Z' => 'bra', 'BraA09t39349Z' => 'bra', 'BraA09t39729Z' => 'bra', 'BraA10t43480Z' => 'bra', 'BraA10t43859Z' => 'bra', 'C02p15180' => 'bna', 'C02p35450' => 'bna', 'C03p15620' => 'bna', 'C04p24780' => 'bna', 'C05p21370' => 'bna', 'C05p26380' => 'bna', 'C06p11780' => 'bna', 'C06p52110' => 'bna', 'C07p17620' => 'bna', 'C07p21490' => 'bna', 'C09p25580' => 'bna', 'C09p48100' => 'bna', 'C09p53340' => 'bna', 'CAN.G1054.13' => 'can', 'CAN.G1836.4' => 'can', 'CAN.G270.14' => 'can', 'CAN.G696.16' => 'can', 'CANSAT11G0572' => 'cansat', 'CANSAT11G0639' => 'cansat', 'CANSAT25G0257' => 'cansat', 'CARHR022590' => 'chi', 'CARHR071620' => 'chi', 'CARHR117560' => 'chi', 'CARHR120200' => 'chi', 'CARHR120210' => 'chi', 'CARHR180890' => 'chi', 'CARHR259790' => 'chi', 'CARHR270150' => 'chi', 'Carub.0001s2179' => 'cru', 'Carub.0001s3348' => 'cru', 'Carub.0001s3349' => 'cru', 'Carub.0002s2505' => 'cru', 'Carub.0006s2733' => 'cru', 'Carub.0008s0562' => 'cru', 'Carub.0008s1699' => 'cru', 'Ca_00132_v3' => 'car', 'Ca_10222_v3' => 'car', 'Ca_12412_v3' => 'car', 'Ca_15920_v3' => 'car', 'Ca_18411_v3' => 'car', 'CBR_g39057' => 'cbr', 'Cc02_g19490' => 'ccan', 'Cc02_g21610' => 'ccan', 'Cc10_g05450' => 'ccan', 'Cc10_g07310' => 'ccan', 'CDE01G0572' => 'cde', 'CDE04G1326' => 'cde', 'CDE06G0208' => 'cde', 'CDE07G1570' => 'cde', 'CDE07G1927' => 'cde', 'CDE10G0061' => 'cde', 'CDE10G0753' => 'cde', 'Cfa000077' => 'cfa', 'Cfa004612' => 'cfa', 'Cfa005606' => 'cfa', 'Cfa009550' => 'cfa', 'Cfa009553' => 'cfa', 'Cfa009583' => 'cfa', 'Cfa013628' => 'cfa', 'Cfa021729' => 'cfa', 'Cfa022360' => 'cfa', 'Ciclev10000337m.g' => 'ccl', 'Ciclev10003448m.g' => 'ccl', 'Ciclev10017802m.g' => 'ccl', 'Ciclev10017866m.g' => 'ccl', 'Ciclev10023507m.g' => 'ccl', 'Ciclev10023979m.g' => 'ccl', 'Ciclev10030389m.g' => 'ccl', 'CiPaw.05G013800' => 'cil', 'CiPaw.05G036200' => 'cil', 'CiPaw.06G152800' => 'cil', 'CiPaw.06G167900' => 'cil', 'CiPaw.07G180700' => 'cil', 'CiPaw.08G044400' => 'cil', 'CiPaw.13G177800' => 'cil', 'ClCG02G006590' => 'cla', 'ClCG03G014580' => 'cla', 'COL.COLO4_09406' => 'col', 'COL.COLO4_16418' => 'col', 'COL.COLO4_20162' => 'col', 'COL.COLO4_24966' => 'col', 'COL.COLO4_28552' => 'col', 'COL.COLO4_31916' => 'col', 'COL.COLO4_32563' => 'col', 'COL.COLO4_33640' => 'col', 'COL.COLO4_37334' => 'col', 'COL.COLO4_37335' => 'col', 'Cpa.g.sc119.35' => 'cpa', 'Cpa.g.sc21.125' => 'cpa', 'Cpa.g.sc292.5' => 'cpa', 'Cpa.g.sc36.125' => 'cpa', 'Cpa.g.sc42.65' => 'cpa', 'Cre12.g544700' => 'cre', 'CsaV3_1G041590' => 'csa', 'CsaV3_1G041600' => 'csa', 'CsaV3_7G008000' => 'csa', 'CSS0000542' => 'camsi', 'CSS0001819' => 'camsi', 'CSS0003984' => 'camsi', 'CSS0004913' => 'camsi', 'CSS0008264' => 'camsi', 'CSS0013624' => 'camsi', 'CSS0014333' => 'camsi', 'CSS0018572' => 'camsi', 'CSS0021744' => 'camsi', 'CSS0034067' => 'camsi', 'CSS0036420' => 'camsi', 'CSS0037468' => 'camsi', 'CSS0038682' => 'camsi', 'CSS0040704' => 'camsi', 'DCAR_004892' => 'dca', 'DCAR_008726' => 'dca', 'DCAR_012806' => 'dca', 'DCAR_020082' => 'dca', 'DCAR_021975' => 'dca', 'DCAR_024462' => 'dca', 'Dinv04416' => 'din', 'Dinv06028' => 'din', 'Dinv09036' => 'din', 'Dinv09037' => 'din', 'Dinv13023' => 'din', 'Dinv13480' => 'din', 'Dinv15778' => 'din', 'Dinv24196' => 'din', 'Dinv32070' => 'din', 'Dinv44766' => 'din', 'Dinv44990' => 'din', 'Duzib041G0326' => 'dzi', 'Duzib041G0719' => 'dzi', 'Duzib052G0574' => 'dzi', 'Duzib093G1416' => 'dzi', 'Duzib093G1564' => 'dzi', 'Duzib116G0180' => 'dzi', 'Duzib116G0937' => 'dzi', 'Duzib132G0546' => 'dzi', 'Duzib132G1073' => 'dzi', 'Duzib151G0751' => 'dzi', 'Duzib248G0024' => 'dzi', 'Duzib248G0767' => 'dzi', 'Duzib268G1610' => 'dzi', 'ECA232G4608' => 'eca', 'ECA234G0654' => 'eca', 'ECA240G0455' => 'eca', 'ECA240G2881' => 'eca', 'ECA247G1041' => 'eca', 'ECA248G3655' => 'eca', 'EL10Ac1g01230' => 'bvu', 'EL10Ac8g20228' => 'bvu', 'EL10Ac9g22246' => 'bvu', 'Eucgr.B03594' => 'egr', 'Eucgr.F00132' => 'egr', 'Eucgr.F02271' => 'egr', 'Eucgr.J01757' => 'egr', 'FAN04G3206' => 'fan', 'FAN05G3412' => 'fan', 'FAN05G3910' => 'fan', 'FAN08G3017' => 'fan', 'FAN08G3501' => 'fan', 'FAN13G1000' => 'fan', 'FAN13G2337' => 'fan', 'FAN15G1299' => 'fan', 'FAN18G1305' => 'fan', 'FAN18G2028' => 'fan', 'FAN20G3020' => 'fan', 'FAN21G1029' => 'fan', 'FAN21G2537' => 'fan', 'FAN24G1937' => 'fan', 'FAN25G2107' => 'fan', 'FAN27G1461' => 'fan', 'FvH4_2g33440' => 'fve', 'FvH4_3g00680' => 'fve', 'FvH4_3g45790' => 'fve', 'FvH4_5g30780' => 'fve', 'FvH4_5g37620' => 'fve', 'Glyma.04G102900' => 'gma', 'Glyma.05G118200' => 'gma', 'Glyma.06G044300' => 'gma', 'Glyma.06G104100' => 'gma', 'Glyma.08G073100' => 'gma', 'Glyma.08G179300' => 'gma', 'Glyma.10G260000' => 'gma', 'Glyma.13G088600' => 'gma', 'Glyma.14G172400' => 'gma', 'Glyma.15G053100' => 'gma', 'Gohir.A01G015000' => 'ghi', 'Gohir.A02G081600' => 'ghi', 'Gohir.A03G185100' => 'ghi', 'Gohir.A04G119200' => 'ghi', 'Gohir.A05G207300' => 'ghi', 'Gohir.A05G227400' => 'ghi', 'Gohir.A06G036300' => 'ghi', 'Gohir.A07G130066' => 'ghi', 'Gohir.A13G066900' => 'ghi', 'Gohir.D01G010700' => 'ghi', 'Gohir.D02G089600' => 'ghi', 'Gohir.D02G206600' => 'ghi', 'Gohir.D04G160833' => 'ghi', 'Gohir.D05G210700' => 'ghi', 'Gohir.D05G229900' => 'ghi', 'Gohir.D06G036800' => 'ghi', 'Gohir.D06G037100' => 'ghi', 'Gohir.D07G134350' => 'ghi', 'Gohir.D13G054700' => 'ghi', 'Gorai.001G146000' => 'gra', 'Gorai.002G012800' => 'gra', 'Gorai.005G100300' => 'gra', 'Gorai.005G111100' => 'gra', 'Gorai.005G234000' => 'gra', 'Gorai.009G217200' => 'gra', 'Gorai.009G238000' => 'gra', 'Gorai.010G041300' => 'gra', 'Gorai.010G041900' => 'gra', 'Gorai.012G148700' => 'gra', 'Gorai.013G061500' => 'gra', 'Gorai.N023700' => 'gra', 'GSVIVG01009020001' => 'vvi', 'GSVIVG01009386001' => 'vvi', 'GSVIVG01025489001' => 'vvi', 'GSVIVG01033396001' => 'vvi', 'GSVIVG01038732001' => 'vvi', 'HanXRQChr01g0021441' => 'han', 'HanXRQChr01g0027991' => 'han', 'HanXRQChr02g0039551' => 'han', 'HanXRQChr03g0068791' => 'han', 'HanXRQChr08g0211941' => 'han', 'HanXRQChr09g0249621' => 'han', 'HanXRQChr09g0266461' => 'han', 'HanXRQChr10g0295851' => 'han', 'HanXRQChr16g0513991' => 'han', 'Haze_06967' => 'cav', 'Haze_06971' => 'cav', 'Haze_10207' => 'cav', 'Haze_10687' => 'cav', 'Haze_22258' => 'cav', 'Haze_22934' => 'cav', 'Haze_26667' => 'cav', 'Hma1.2p1_0120F.1_g057340' => 'hma', 'Hma1.2p1_0210F.1_g089690' => 'hma', 'Hma1.2p1_0704F.1_g206710' => 'hma', 'HPP92_012142' => 'vpl', 'HPP92_016811' => 'vpl', 'Hund26959' => 'sun', 'Lalb_Chr02g0145191' => 'lal', 'Lalb_Chr06g0172931' => 'lal', 'Lalb_Chr10g0097771' => 'lal', 'Lalb_Chr10g0102341' => 'lal', 'Lalb_Chr10g0102351' => 'lal', 'Lalb_Chr11g0062781' => 'lal', 'Lalb_Chr11g0065451' => 'lal', 'Lalb_Chr11g0065461' => 'lal', 'Lalb_Chr11g0065471' => 'lal', 'Lalb_Chr14g0368451' => 'lal', 'Lalb_Chr15g0090461' => 'lal', 'Lalb_Chr15g0090471' => 'lal', 'Lalb_Chr20g0123051' => 'lal', 'Lalb_Chr22g0354791' => 'lal', 'Lalb_Chr22g0354801' => 'lal', 'Lalb_Chr23g0267371' => 'lal', 'Lj1A522T65' => 'lonja', 'Lj1C521T5' => 'lonja', 'Lj1g0001241' => 'lja', 'Lj1g0014869' => 'lja', 'Lj4A104G24' => 'lonja', 'Lj4A67G48' => 'lonja', 'Lj5A216T103' => 'lonja', 'Lj5g0017767' => 'lja', 'Lj6g0013680' => 'lja', 'Lj6g0021721' => 'lja', 'Lj9A353G64' => 'lonja', 'Lsat_1_v5_gn_1_23401' => 'lsa', 'Lsat_1_v5_gn_1_68720' => 'lsa', 'Lsat_1_v5_gn_4_129260' => 'lsa', 'Lsat_1_v5_gn_5_107181' => 'lsa', 'Lsat_1_v5_gn_6_113080' => 'lsa', 'Lsat_1_v5_gn_9_112000' => 'lsa', 'Lsat_1_v5_gn_9_117381' => 'lsa', 'Manes.02G153200' => 'mes', 'Manes.03G086900' => 'mes', 'Manes.14G015800' => 'mes', 'Manes.18G043600' => 'mes', 'Manes.18G068100' => 'mes', 'Mapoly0036s0144' => 'mpo', 'Mapoly0066s0093' => 'mpo', 'MBI02_g08729_MAGBIO' => 'mbi', 'MBI05_g15586_MAGBIO' => 'mbi', 'MBI11_g31290_MAGBIO' => 'mbi', 'MCO03G041' => 'mco', 'MD03G1003000' => 'mdo', 'MD05G1093500' => 'mdo', 'MD05G1360200' => 'mdo', 'MD08G1089500' => 'mdo', 'MD08G1181900' => 'mdo', 'MD11G1002800' => 'mdo', 'MD15G1074100' => 'mdo', 'MD15G1367200' => 'mdo', 'Medtr1g051630' => 'mtr', 'Medtr1g100230' => 'mtr', 'Medtr1g106975' => 'mtr', 'Medtr2g006930' => 'mtr', 'Medtr2g006940' => 'mtr', 'Medtr2g008770' => 'mtr', 'Medtr2g055280' => 'mtr', 'Medtr3g102650' => 'mtr', 'Medtr4g029480' => 'mtr', 'Medtr5g062070' => 'mtr', 'Medtr5g063650' => 'mtr', 'Medtr5g063660' => 'mtr', 'MELO3C015569.2' => 'cme', 'MELO3C015570.2' => 'cme', 'MELO3C028587.2' => 'cme', 'Migut.B00407' => 'egut', 'Migut.B00614' => 'egut', 'Migut.C00510' => 'egut', 'Migut.M01420' => 'egut', 'Migut.N01066' => 'egut', 'MSTRG.1045' => 'ama', 'MSTRG.16579' => 'ama', 'MSTRG.25051' => 'ama', 'Nitab4.5_0000253g0100' => 'nta', 'Nitab4.5_0000934g0210' => 'nta', 'Nitab4.5_0002448g0020' => 'nta', 'Nitab4.5_0004707g0080' => 'nta', 'Nitab4.5_0005052g0020' => 'nta', 'Nitab4.5_0006538g0060' => 'nta', 'Nn1g04649' => 'nnu', 'Nn1g05337' => 'nnu', 'Nn2g14580' => 'nnu', 'Nn2g15873' => 'nnu', 'Nn5g30475' => 'nnu', 'Nn7g35842' => 'nnu', 'Oeu000242.1' => 'oeu', 'Oeu007959.1' => 'oeu', 'Oeu022066.1' => 'oeu', 'Oeu036420.1' => 'oeu', 'Oeu036464.1' => 'oeu', 'Oeu038122.1' => 'oeu', 'Oeu050856.1' => 'oeu', 'Oeu059792.1' => 'oeu', 'Os03g0191700' => 'osa', 'Os09g0371800' => 'osa', 'Os11g0579900' => 'osa', 'Os12g0488900' => 'osa', 'Os12g0493900' => 'osa', 'Peaxi162Scf00036g00222' => 'pax', 'Peaxi162Scf00041g01316' => 'pax', 'Peaxi162Scf00081g00089' => 'pax', 'Peaxi162Scf00152g00328' => 'pax', 'Peaxi162Scf00200g00418' => 'pax', 'PGR031G3698' => 'pgr', 'PGR083G0676' => 'pgr', 'PGR083G1906' => 'pgr', 'PGR102G0215' => 'pgr', 'PGR119G1679' => 'pgr', 'PGSC0003DMG400017721' => 'stu', 'PGSC0003DMG400021538' => 'stu', 'PGSC0003DMG400024012' => 'stu', 'PGSC0003DMG400025529' => 'stu', 'Phvul.002G052900' => 'pvu', 'Phvul.002G208100' => 'pvu', 'Phvul.006G206800' => 'pvu', 'Phvul.007G042200' => 'pvu', 'Phvul.008G173000' => 'pvu', 'Phvul.009G030400' => 'pvu', 'Phvul.009G069800' => 'pvu', 'Potri.001G002600' => 'ptr', 'Potri.001G298000' => 'ptr', 'Potri.001G457700' => 'ptr', 'Potri.002G095400' => 'ptr', 'Potri.002G120900' => 'ptr', 'Potri.003G222300' => 'ptr', 'Potri.011G144000' => 'ptr', 'Potri.014G020300' => 'ptr', 'Pp3c5_3970' => 'ppa', 'Pp3c6_20180' => 'ppa', 'PRCOL_00003901' => 'pco', 'Prupe.1G426900' => 'ppe', 'Prupe.1G515100' => 'ppe', 'Prupe.4G007700' => 'ppe', 'Prupe.6G002600' => 'ppe', 'Prupe.8G138200' => 'ppe', 'Psat1g216720' => 'psa', 'Psat2g073280' => 'psa', 'Psat5g039800' => 'psa', 'Psat6g216400' => 'psa', 'PSO210G1285' => 'pso', 'PSO210G5311' => 'pso', 'PSO210G5928' => 'pso', 'PSO339G4665' => 'pso', 'PSO384G2965' => 'pso', 'PSO447G0319' => 'pso', 'PSO541G0914' => 'pso', 'PSO675G2653' => 'pso', 'PSO675G5199' => 'pso', 'PSO675G7317' => 'pso', 'PSO675G7398' => 'pso', 'PSO675G8137' => 'pso', 'PSO732G0168' => 'pso', 'PSO732G0345' => 'pso', 'PSO732G0466' => 'pso', 'QL01p010635' => 'qlo', 'QL02p002604' => 'qlo', 'QL05p068663' => 'qlo', 'QL05p069029' => 'qlo', 'QL11p020619' => 'qlo', 'QL11p032388' => 'qlo', 'QL12p036586' => 'qlo', 'RcHm_v2.0_Chr2g0161571' => 'rch', 'RcHm_v2.0_Chr3g0468621' => 'rch', 'RcHm_v2.0_Chr5g0000911' => 'rch', 'RcHm_v2.0_Chr5g0083871' => 'rch', 'RcHm_v2.0_Chr6g0254321' => 'rch', 'RcHm_v2.0_Chr6g0254351' => 'rch', 'RcHm_v2.0_Chr6g0309091' => 'rch', 'RcHm_v2.0_Chr7g0239301' => 'rch', 'Rhsim02G0096500' => 'rsi', 'Rhsim05G0089100' => 'rsi', 'Rhsim06G0058800' => 'rsi', 'Rhsim06G0059000' => 'rsi', 'Rhsim07G0201900' => 'rsi', 'Rhsim07G0222300' => 'rsi', 'Rhsim11G0156100' => 'rsi', 'Rhsim11G0157500' => 'rsi', 'Rhsim12G0107700' => 'rsi', 'Rhsim13G0233400' => 'rsi', 'Sabra01G0001900' => 'sbr', 'Sabra03G0165300' => 'sbr', 'Sabra11G0128300' => 'sbr', 'Sabra14G0013300' => 'sbr', 'Sabra16G0186900' => 'sbr', 'Sabra16G0310200' => 'sbr', 'SalBow5G4469' => 'sbo', 'SalBow6G0485' => 'sbo', 'SalBow6G3931' => 'sbo', 'SalBow6G4672' => 'sbo', 'SalBow6G5193' => 'sbo', 'SalBow7G3497' => 'sbo', 'SalBow8G1646' => 'sbo', 'Sc01g0000370' => 'sci', 'Sc02g0007690' => 'sci', 'Sc23g0000190' => 'sci', 'Sed0001015' => 'sed', 'Sed0015516' => 'sed', 'Sed0016511' => 'sed', 'Sed0017684' => 'sed', 'Sed0024521' => 'sed', 'SEGI_08101' => 'sgi', 'SEGI_24099' => 'sgi', 'SEGI_36318' => 'sgi', 'SEGI_41456' => 'sgi', 'SGA_v2.0_scaffold14G06830' => 'sas', 'SGA_v2.0_scaffold214G42279' => 'sas', 'SGA_v2.0_scaffold28G11868' => 'sas', 'SGA_v2.0_scaffold32G13023' => 'sas', 'SGA_v2.0_scaffold332G48963' => 'sas', 'SGA_v2.0_scaffold4G01859' => 'sas', 'SGA_v2.0_scaffold7G03726' => 'sas', 'SHI28722' => 'shi', 'SHI28723' => 'shi', 'SMO145G0210' => 'smo', 'SMO364G0180' => 'smo', 'Solyc01g028800.3' => 'sly', 'Solyc04g073980.3' => 'sly', 'Solyc04g078210.3' => 'sly', 'Sopen01g016800' => 'spe', 'Sopen04g029190' => 'spe', 'Sopen04g031830' => 'spe', 'Sp1g19750' => 'spa', 'Sp1g23900' => 'spa', 'Sp1g30440' => 'spa', 'Sp2g07870' => 'spa', 'Sp5g33280' => 'spa', 'Sp6g18310' => 'spa', 'TAR369G1023' => 'tar', 'TAR376G0184' => 'tar', 'TAR381G1180' => 'tar', 'TAR625G1120' => 'tar', 'TAR628G0495' => 'tar', 'TAR628G1001' => 'tar', 'TAR633G0424' => 'tar', 'TAR633G0739' => 'tar', 'THA.LOC104800154' => 'tha', 'THA.LOC104810822' => 'tha', 'THA.LOC104811720' => 'tha', 'THA.LOC104812584' => 'tha', 'THA.LOC104814181' => 'tha', 'THA.LOC104820505' => 'tha', 'THA.LOC104825188' => 'tha', 'Thecc.02G112100' => 'tca', 'Thecc.02G139300' => 'tca', 'Thecc.04G201100' => 'tca', 'Thecc.06G236200' => 'tca', 'Thecc.08G093400' => 'tca', 'Thecc.08G108200' => 'tca', 'Thhalv10001811m.g' => 'esa', 'Thhalv10002283m.g' => 'esa', 'Thhalv10003331m.g' => 'esa', 'Thhalv10009481m.g' => 'esa', 'Thhalv10009853m.g' => 'esa', 'Thhalv10009986m.g' => 'esa', 'Thhalv10015278m.g' => 'esa', 'Thhalv10018339m.g' => 'esa', 'Thhalv10028569m.g' => 'esa', 'TPR.G21680' => 'tpr', 'TPR.G25598' => 'tpr', 'TPR.G27071' => 'tpr', 'TPR.G27123' => 'tpr', 'TPR.G34541' => 'tpr', 'TWI09G0183' => 'twi', 'TWI31G1047' => 'twi', 'TWI32G0835' => 'twi', 'TWI36G0845' => 'twi', 'TWI36G0942' => 'twi', 'TWI38G0044' => 'twi', 'TWI38G2223' => 'twi', 'TWI56G0548' => 'twi', 'TWI60G1322' => 'twi', 'TWI74G1103' => 'twi', 'unitig_22.g6067' => 'ugi', 'unitig_578.g16547' => 'ugi', 'unitig_748.g7606' => 'ugi', 'unitig_749.g13838' => 'ugi', 'unitig_8.g3486' => 'ugi', 'unitig_8.g5038' => 'ugi', 'vmacro04263' => 'vma', 'vmacro04581' => 'vma', 'vmacro04749' => 'vma', 'vmacro19457' => 'vma', 'vmacro21461' => 'vma', 'vmacro23201' => 'vma', 'VMungo0251G0525' => 'vmu', 'VMungo0251G0704' => 'vmu', 'VMungo0540G1668' => 'vmu', 'VMungo0647G0485' => 'vmu', 'VMungo0720G0082' => 'vmu', 'VMungo1215G1563' => 'vmu', 'VMungo1309G2407' => 'vmu', 'VMungo1383G3596' => 'vmu', 'Zm00001eb006950' => 'zma', 'Zm00001eb098710' => 'zma', 'Zm00001eb200460' => 'zma', 'Zm00001eb311340' => 'zma', 'Zm00001eb401310' => 'zma', 'Zm00001eb408690' => 'zma', 'Zm00001eb409750' => 'zma' ) $gf_id = 'HOM05D000867' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000867' ) $data_identifier = 'HOM05D000867' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 2, 'aly' => (int) 9, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 5, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 19, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 11, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 2, 'sun' => (int) 1, 'lal' => (int) 16, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 4, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 5, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb409750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1